CHAPTER 16 DEVELOPMENT, STEM CELLS, AND CANCER
Scientific Skills Exercise
Teaching objective: Students will compare quantitative data with spatial data related to gene
expression during animal development.
Teaching tips: A version of this Scientific Skills Exercise can be assigned in MasteringBiology.
The two approaches to studying gene expression shown in this exercise complement each other.
The mRNA measurements (done by quantitative reverse-transcription PCR in this case) are
quantitative but have low spatial resolution because the entire digit-forming area is dissected out
and used for a single analysis. The in situ hybridizations are advantageous for showing spatial
impress upon students the value of carefully observing subtle aspects of the patterns of mRNA
distribution in the paws. Note that the control embryo shows fairly even dark staining across the
whole digit-forming area of the paw and has the highest amount of mRNA, while deleting all
three possible regulatory segments (A, B, and C) eliminates most of the mRNA and staining,
again in a fairly even pattern. The other two deletions, however, show intermediate levels of
mRNA but an uneven pattern of expression. When C is eliminated there is one patch of lighter
staining near the thumb region that accounts for most of the reduction in overall mRNA level.
If you want to challenge your students, you can ask them what type of control element they
conclude might be present in region C. You can help them think through the scientific logic to
arrive at the idea that there must be one or more control elements that specifically up-regulate
expression in the pre-thumb area. (This is, in fact, what the researchers have concluded.)
Answers: